Md. Altaf-Ul-Amin
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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
NJ Krogan, G Cagney, H Yu, G Zhong, X Guo, A Ignatchenko, J Li, S Pu, ...
Nature 440 (7084), 637-643, 2006
Sequence-specific error profile of Illumina sequencers
K Nakamura, T Oshima, T Morimoto, S Ikeda, H Yoshikawa, Y Shiwa, ...
Nucleic acids research 39 (13), e90-e90, 2011
KNApSAcK family databases: integrated metabolite–plant species databases for multifaceted plant research
FM Afendi, T Okada, M Yamazaki, A Hirai-Morita, Y Nakamura, ...
Plant and Cell Physiology 53 (2), e1-e1, 2012
Development and implementation of an algorithm for detection of protein complexes in large interaction networks
M Altaf-Ul-Amin, Y Shinbo, K Mihara, K Kurokawa, S Kanaya
BMC bioinformatics 7, 1-13, 2006
Large-scale identification of protein–protein interaction of Escherichia coli K-12
Genome Research 16 (5), 686-691, 2006
KNApSAcK: a comprehensive species-metabolite relationship database
Y Shinbo, Y Nakamura, M Altaf-Ul-Amin, H Asahi, K Kurokawa, M Arita, ...
Plant metabolomics, 165-181, 2006
Metabolomics of medicinal plants: the importance of multivariate analysis of analytical chemistry data
T Okada, F Mochamad Afendi, M Altaf-Ul-Amin, H Takahashi, ...
Current Computer-Aided Drug Design 6 (3), 179-196, 2010
KNApSAcK metabolite activity database for retrieving the relationships between metabolites and biological activities
Y Nakamura, F Mochamad Afendi, A Kawsar Parvin, N Ono, K Tanaka, ...
Plant and Cell Physiology 55 (1), e7-e7, 2014
Systems biology in the context of big data and networks
M Altaf-Ul-Amin, FM Afendi, SK Kiboi, S Kanaya
BioMed research international 2014, 2014
Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry
H Takahashi, K Kai, Y Shinbo, K Tanaka, D Ohta, T Oshima, ...
Analytical and Bioanalytical Chemistry 391, 2769-2782, 2008
PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein …
S Kikugawa, K Nishikata, K Murakami, Y Sato, M Suzuki, M Altaf-Ul-Amin, ...
BMC systems biology 6 (2), 1-14, 2012
KNApSAcK-3D: a three-dimensional structure database of plant metabolites
K Nakamura, N Shimura, Y Otabe, A Hirai-Morita, Y Nakamura, N Ono, ...
Plant and Cell Physiology 54 (2), e4-e4, 2013
Data mining methods for omics and knowledge of crude medicinal plants toward big data biology
FM Afendi, N Ono, Y Nakamura, K Nakamura, LK Darusman, N Kibinge, ...
Computational and Structural Biotechnology Journal 4 (5), e201301010, 2013
Novel approach to classify plants based on metabolite-content similarity
K Liu, AA Abdullah, M Huang, T Nishioka, M Altaf-Ul-Amin, S Kanaya
BioMed research international 2017, 2017
Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks
R Eguchi, N Ono, A Hirai Morita, T Katsuragi, S Nakamura, M Huang, ...
BMC bioinformatics 20 (1), 1-13, 2019
Development and mining of a volatile organic compound database
AA Abdullah, M Altaf-Ul-Amin, N Ono, T Sato, T Sugiura, AH Morita, ...
BioMed research international 2015, 2015
Prediction of operon-like gene clusters in the Arabidopsis thaliana genome based on co-expression analysis of neighboring genes
M Wada, H Takahashi, M Altaf-Ul-Amin, K Nakamura, MY Hirai, D Ohta, ...
Gene 503 (1), 56-64, 2012
DPClus: a density-periphery based graph clustering software mainly focused on detection of protein complexes in interaction networks
M Altaf-Ul-Amin, H Tsuji, K Kurokawa, H Asahi, Y Shinbo, S Kanaya
Journal of Computer Aided Chemistry 7, 150-156, 2006
Supervised clustering based on DPClusO: Prediction of plant-disease relations using Jamu formulas of KNApSAcK database
SH Wijaya, H Husnawati, FM Afendi, I Batubara, LK Darusman, ...
BioMed research international 2014, 2014
Partitioning a PPI network into overlapping modules constrained by high-density and periphery tracking
M Altaf-Ul-Amin, M Wada, S Kanaya
International Scholarly Research Notices 2012, 2012
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