David Phillip Nickerson

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Peter HunterDirector, Auckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Poul NielsenProfessor, Engineering Science and Auckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Dagmar WaltemathProfessor of Medical InformaticsVerified email at uni-greifswald.de
Michael HuckaCalifornia Institute of TechnologyVerified email at caltech.edu
Alan GarnyAuckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Martin GolebiewskiHITS gGmbH, Heidelberg (Germany)Verified email at h-its.org
Jonathan CooperUniversity College LondonVerified email at ucl.ac.uk
Frank T. BergmannBioQUANT/COS, Heidelberg University, Heidelberg, GermanyVerified email at caltech.edu
Falk SchreiberProfessor, University of Konstanz and Monash UniversityVerified email at uni-konstanz.de
Herbert M SauroUniversity of WashingtonVerified email at u.washington.edu
Chris MyersUniversity of UtahVerified email at ece.utah.edu
Koray AtalagAuckland Bioengineering Institute, University of AucklandVerified email at auckland.ac.nz
Martyn NashProfessor of Biomedical Engineering, University of Auckland.Verified email at auckland.ac.nz
Edmund J. CrampinProfessor, University of Melbourne, AustraliaVerified email at unimelb.edu.au
Brett G. OlivierVU AmsterdamVerified email at vu.nl
Nicolas SmithQueensland University of TechnologyVerified email at qut.edu.au
Dr. Matthias KönigHumboldt-University BerlinVerified email at hu-berlin.de
Martin BuistDepartment of Bioengineering, National University of SingaporeVerified email at nus.edu.sg
Sarah KeatingUCLVerified email at ucl.ac.uk
Padraig GleesonDepartment of Neuroscience, Physiology and Pharmacology, University College LondonVerified email at ucl.ac.uk

David Phillip Nickerson

Auckland Bioengineering Institute, University of Auckland

Verified email at auckland.ac.nz - Homepage

Physiome CellML Standards Computational Physiology SED-ML


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An overview of CellML 1.1, a biological model description language AA Cuellar, CM Lloyd, PF Nielsen, DP Bullivant, DP Nickerson, PJ Hunter Simulation 79 (12), 740-747, 2003	395	2003
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ... BMC systems biology 5 (1), 1-10, 2011	275	2011
CellML and associated tools and techniques A Garny, DP Nickerson, J Cooper, RW Santos, AK Miller, S McKeever, ... Philosophical transactions of the Royal Society A: Mathematical, physical …, 2008	169	2008
The physiome model repository 2 T Yu, CM Lloyd, DP Nickerson, MT Cooling, AK Miller, A Garny, ... Bioinformatics 27 (5), 743-744, 2011	161	2011
Multiscale computational modelling of the heart NP Smith, DP Nickerson, EJ Crampin, PJ Hunter Acta Numerica 13, 371-431, 2004	154	2004
Minimum information about a simulation experiment (MIASE) D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ... PLoS computational biology 7 (4), e1001122, 2011	148	2011
OpenCMISS: a multi-physics & multi-scale computational infrastructure for the VPH/Physiome project C Bradley, A Bowery, R Britten, V Budelmann, O Camara, R Christie, ... Progress in biophysics and molecular biology 107 (1), 32-47, 2011	146	2011
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15 (1), 1-9, 2014	133	2014
New developments in a strongly coupled cardiac electromechanical model D Nickerson, N Smith, P Hunter EP Europace 7 (s2), S118-S127, 2005	112	2005
An overview of the CellML API and its implementation AK Miller, J Marsh, A Reeve, A Garny, R Britten, M Halstead, J Cooper, ... BMC bioinformatics 11 (1), 1-12, 2010	91	2010
CellML metadata standards, associated tools and repositories DA Beard, R Britten, MT Cooling, A Garny, MDB Halstead, PJ Hunter, ... Philosophical Transactions of the Royal Society A: Mathematical, Physical …, 2009	87	2009
Mathematical modelling of the heart: cell to organ NP Smith, PJ Mulquiney, MP Nash, CP Bradley, DP Nickerson, PJ Hunter Chaos, Solitons & Fractals 13 (8), 1613-1621, 2002	79	2002
A model of cardiac cellular electromechanics DP Nickerson, NP Smith, PJ Hunter Philosophical Transactions of the Royal Society of London. Series A …, 2001	78	2001
Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ... Frontiers in bioengineering and biotechnology 3, 19, 2015	75	2015
Modelling the passive and nerve activated response of the rectus femoris muscle to a flexion loading: a finite element framework JW Fernandez, ML Buist, DP Nickerson, PJ Hunter Medical engineering & physics 27 (10), 862-870, 2005	62	2005
Community-driven roadmap for integrated disease maps M Ostaszewski, S Gebel, I Kuperstein, A Mazein, A Zinovyev, U Dogrusoz, ... Briefings in bioinformatics 20 (2), 659-670, 2019	55	2019
Harmonizing semantic annotations for computational models in biology ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ... Briefings in bioinformatics 20 (2), 540-550, 2019	52	2019
Computational multiscale modeling in the IUPS physiome project: modeling cardiac electromechanics D Nickerson, M Nash, P Nielsen, N Smith, P Hunter IBM Journal of Research and Development 50 (6), 617-630, 2006	50	2006
The Noble cardiac ventricular electrophysiology models in CellML DP Nickerson, PJ Hunter Progress in biophysics and molecular biology 90 (1-3), 346-359, 2006	38	2006
The CellML 1.1 specification A Cuellar, W Hedley, M Nelson, C Lloyd, M Halstead, D Bullivant, ... Journal of Integrative Bioinformatics 12 (2), 4-85, 2015	36	2015

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