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Justin Zook
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The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
18972022
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
13472019
Integrating human sequence data sets provides a resource of benchmark SNP and indel genotype calls
JM Zook, B Chapman, J Wang, D Mittelman, O Hofmann, W Hide, M Salit
Nature biotechnology 32 (3), 246-251, 2014
8462014
Extensive sequencing of seven human genomes to characterize benchmark reference materials
JM Zook, D Catoe, J McDaniel, L Vang, N Spies, A Sidow, Z Weng, Y Liu, ...
Scientific data 3 (1), 1-26, 2016
6772016
Assuring the quality of next-generation sequencing in clinical laboratory practice
AS Gargis, L Kalman, MW Berry, DP Bick, DP Dimmock, T Hambuch, F Lu, ...
Nature biotechnology 30 (11), 1033-1036, 2012
5052012
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
Nature biotechnology 38 (9), 1044-1053, 2020
4302020
A draft human pangenome reference
WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ...
Nature 617 (7960), 312-324, 2023
3492023
An open resource for accurately benchmarking small variant and reference calls
JM Zook, J McDaniel, ND Olson, J Wagner, H Parikh, H Heaton, SA Irvine, ...
Nature biotechnology 37 (5), 561-566, 2019
346*2019
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
328*2020
Best practices for benchmarking germline small-variant calls in human genomes
P Krusche, L Trigg, PC Boutros, CE Mason, FM De La Vega, BL Moore, ...
Nature biotechnology 37 (5), 555-560, 2019
3202019
Stable nanoparticle aggregates/agglomerates of different sizes and the effect of their size on hemolytic cytotoxicity
JM Zook, RI MacCuspie, LE Locascio, MD Halter, JT Elliott
Nanotoxicology 5 (4), 517-530, 2011
2992011
Complete genomic and epigenetic maps of human centromeres
N Altemose, GA Logsdon, AV Bzikadze, P Sidhwani, SA Langley, ...
Science 376 (6588), eabl4178, 2022
2732022
Measuring silver nanoparticle dissolution in complex biological and environmental matrices using UV–visible absorbance
JM Zook, SE Long, D Cleveland, CLA Geronimo, RI MacCuspie
Analytical and bioanalytical chemistry 401, 1993-2002, 2011
2522011
Best practices for evaluating single nucleotide variant calling methods for microbial genomics
ND Olson, SP Lund, RE Colman, JT Foster, JW Sahl, JM Schupp, P Keim, ...
Frontiers in genetics 6, 235, 2015
2172015
A complete reference genome improves analysis of human genetic variation
S Aganezov, SM Yan, DC Soto, M Kirsche, S Zarate, P Avdeyev, ...
Science 376 (6588), eabl3533, 2022
2152022
Comparing variant call files for performance benchmarking of next-generation sequencing variant calling pipelines
JG Cleary, R Braithwaite, K Gaastra, BS Hilbush, S Inglis, SA Irvine, ...
BioRxiv, 023754, 2015
1702015
Good laboratory practice for clinical next-generation sequencing informatics pipelines
AS Gargis, L Kalman, DP Bick, C Da Silva, DP Dimmock, BH Funke, ...
Nature biotechnology 33 (7), 689-693, 2015
1642015
Effects of temperature, acyl chain length, and flow-rate ratio on liposome formation and size in a microfluidic hydrodynamic focusing device
JM Zook, WN Vreeland
Soft matter 6 (6), 1352-1360, 2010
1602010
Chromosome-scale, haplotype-resolved assembly of human genomes
S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
Nature biotechnology 39 (3), 309-312, 2021
156*2021
Medical implications of technical accuracy in genome sequencing
RL Goldfeder, JR Priest, JM Zook, ME Grove, D Waggott, MT Wheeler, ...
Genome medicine 8, 1-12, 2016
1452016
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