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Ben Langmead
Ben Langmead
Associate Professor of Computer Science, Johns Hopkins University
Verified email at cs.jhu.edu - Homepage
Title
Cited by
Cited by
Year
Fast gapped-read alignment with Bowtie 2
B Langmead, SL Salzberg
Nature methods 9 (4), 357-359, 2012
477552012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
B Langmead, C Trapnell, M Pop, SL Salzberg
Genome biology 10, 1-10, 2009
236392009
HISAT: a fast spliced aligner with low memory requirements
D Kim, B Langmead, SL Salzberg
Nature methods 12 (4), 357-360, 2015
173772015
Improved metagenomic analysis with Kraken 2
DE Wood, J Lu, B Langmead
Genome biology 20, 1-13, 2019
38502019
Tackling the widespread and critical impact of batch effects in high-throughput data
JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ...
Nature Reviews Genetics 11 (10), 733-739, 2010
21242010
Aligning short sequencing reads with Bowtie
B Langmead
Current protocols in bioinformatics 32 (1), 11.7. 1-11.7. 14, 2010
14082010
Increased methylation variation in epigenetic domains across cancer types
KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ...
Nature genetics 43 (8), 768-775, 2011
12202011
Ballgown bridges the gap between transcriptome assembly and expression analysis
AC Frazee, G Pertea, AE Jaffe, B Langmead, SL Salzberg, JT Leek
Nature biotechnology 33 (3), 243-246, 2015
7722015
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
KD Hansen, B Langmead, RA Irizarry
Genome biology 13, 1-10, 2012
7702012
Searching for SNPs with cloud computing
B Langmead, MC Schatz, J Lin, M Pop, SL Salzberg
Genome biology 10, 1-10, 2009
6592009
Scaling read aligners to hundreds of threads on general-purpose processors
B Langmead, C Wilks, V Antonescu, R Charles
Bioinformatics 35 (3), 421-432, 2019
5972019
Cloud-scale RNA-sequencing differential expression analysis with Myrna
B Langmead, KD Hansen, JT Leek
Genome biology 11, 1-11, 2010
4352010
Reproducible RNA-seq analysis using recount2
L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ...
Nature biotechnology 35 (4), 319-321, 2017
4032017
Cloud computing and the DNA data race
MC Schatz, B Langmead, SL Salzberg
Nature biotechnology 28 (7), 691-693, 2010
3812010
Reversible switching between epigenetic states in honeybee behavioral subcastes
BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ...
Nature neuroscience 15 (10), 1371-1373, 2012
3622012
Computational pan-genomics: status, promises and challenges
Briefings in bioinformatics 19 (1), 118-135, 2018
3392018
Polyester: simulating RNA-seq datasets with differential transcript expression
AC Frazee, AE Jaffe, B Langmead, JT Leek
Bioinformatics 31 (17), 2778-2784, 2015
3022015
Cloud computing for genomic data analysis and collaboration
B Langmead, A Nellore
Nature Reviews Genetics 19 (4), 208-219, 2018
2922018
Lighter: fast and memory-efficient sequencing error correction without counting
L Song, L Florea, B Langmead
Genome biology 15, 1-13, 2014
2912014
Metagenome analysis using the Kraken software suite
J Lu, N Rincon, DE Wood, FP Breitwieser, C Pockrandt, B Langmead, ...
Nature protocols 17 (12), 2815-2839, 2022
2052022
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