John Koomen
John Koomen
Senior Member, Moffitt Cancer Center
Verified email at
Cited by
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HDAC6 modulates cell motility by altering the acetylation level of cortactin
X Zhang, Z Yuan, Y Zhang, S Yong, A Salas-Burgos, J Koomen, ...
Molecular cell 27 (2), 197-213, 2007
PTEN loss confers BRAF inhibitor resistance to melanoma cells through the suppression of BIM expression
KHT Paraiso, Y Xiang, VW Rebecca, EV Abel, YA Chen, AC Munko, ...
Cancer research 71 (7), 2750-2760, 2011
Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach
SA Carr, SE Abbatiello, BL Ackermann, C Borchers, B Domon, ...
Molecular & Cellular Proteomics 13 (3), 907-917, 2014
Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum
JS Morris, KR Coombes, J Koomen, KA Baggerly, R Kobayashi
Bioinformatics 21 (9), 1764-1775, 2005
Anion template effect on the self-assembly and interconversion of metallacyclophanes
CS Campos-Fernández, BL Schottel, HT Chifotides, JK Bera, J Bacsa, ...
Journal of the American Chemical Society 127 (37), 12909-12923, 2005
Induction of p21 by p53 following DNA damage inhibits both Cdk4 and Cdk2 activities
G He, ZH Siddik, Z Huang, R Wang, J Koomen, R Kobayashi, AR Khokhar, ...
Oncogene 24 (18), 2929-2943, 2005
A chemical and phosphoproteomic characterization of dasatinib action in lung cancer
J Li, U Rix, B Fang, Y Bai, A Edwards, J Colinge, KL Bennett, J Gao, ...
Nature chemical biology 6 (4), 291-299, 2010
Direct tandem mass spectrometry reveals limitations in protein profiling experiments for plasma biomarker discovery
JM Koomen, D Li, L Xiao, TC Liu, KR Coombes, J Abbruzzese, ...
Journal of proteome research 4 (3), 972-981, 2005
Comparative analyses of the three-dimensional structures and enzymatic properties of α, β, γ, and δ isoforms of Ca2+-calmodulin-dependent protein kinase II
TR Gaertner, SJ Kolodziej, D Wang, R Kobayashi, JM Koomen, JK Stoops, ...
Journal of Biological Chemistry 279 (13), 12484-12494, 2004
SIRT1 deacetylates the DNA methyltransferase 1 (DNMT1) protein and alters its activities
L Peng, Z Yuan, H Ling, K Fukasawa, K Robertson, N Olashaw, J Koomen, ...
Molecular and cellular biology 31 (23), 4720-4734, 2011
Plasma protein profiling for diagnosis of pancreatic cancer reveals the presence of host response proteins
JM Koomen, LN Shih, KR Coombes, D Li, L Xiao, IJ Fidler, JL Abbruzzese, ...
Clinical Cancer Research 11 (3), 1110-1118, 2005
The HSP90 inhibitor XL888 overcomes BRAF inhibitor resistance mediated through diverse mechanisms
KHT Paraiso, HE Haarberg, E Wood, VW Rebecca, YA Chen, Y Xiang, ...
Clinical cancer research 18 (9), 2502-2514, 2012
Fine-tuning the ring-size of metallacyclophanes: a rational approach to molecular pentagons
CS Campos-Fernández, R Clérac, JM Koomen, DH Russell, KR Dunbar
Journal of the American Chemical Society 123 (4), 773-774, 2001
Macrophage metabolism of apoptotic cell-derived arginine promotes continual efferocytosis and resolution of injury
A Yurdagul, M Subramanian, X Wang, SB Crown, OR Ilkayeva, L Darville, ...
Cell metabolism 31 (3), 518-533. e10, 2020
Ack1 mediated AKT/PKB tyrosine 176 phosphorylation regulates its activation
K Mahajan, D Coppola, S Challa, B Fang, YA Chen, W Zhu, AS Lopez, ...
PloS one 5 (3), e9646, 2010
Lipid/peptide/nucleotide separation with MALDI-ion mobility-TOF MS
AS Woods, M Ugarov, T Egan, J Koomen, KJ Gillig, K Fuhrer, M Gonin, ...
Analytical chemistry 76 (8), 2187-2195, 2004
Chronic acidosis in the tumour microenvironment selects for overexpression of LAMP2 in the plasma membrane
M Damaghi, NK Tafreshi, MC Lloyd, R Sprung, V Estrella, JW Wojtkowiak, ...
Nature communications 6 (1), 8752, 2015
Pharmacoproteomic analysis of prechemotherapy and postchemotherapy plasma samples from patients receiving neoadjuvant or adjuvant chemotherapy for breast carcinoma
L Pusztai, BW Gregory, KA Baggerly, B Peng, J Koomen, HM Kuerer, ...
Cancer: Interdisciplinary International Journal of the American Cancer …, 2004
MPP8 mediates the interactions between DNA methyltransferase Dnmt3a and H3K9 methyltransferase GLP/G9a
Y Chang, L Sun, K Kokura, JR Horton, M Fukuda, A Espejo, V Izumi, ...
Nature communications 2 (1), 533, 2011
Proteomic contributions to personalized cancer care
JM Koomen, EB Haura, G Bepler, R Sutphen, ER Remily-Wood, ...
Molecular & Cellular Proteomics 7 (10), 1780-1794, 2008
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