Emiley Eloe-Fadrosh
Emiley Eloe-Fadrosh
Metagenome Program Head, Joint Genome Institute
Verified email at lbl.gov - Homepage
Title
Cited by
Cited by
Year
Uncovering Earth’s virome
D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ...
Nature 536 (7617), 425-430, 2016
4702016
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
RM Bowers, NC Kyrpides, R Stepanauskas, M Harmon-Smith, D Doud, ...
Nature biotechnology 35 (8), 725-731, 2017
4542017
IMG/M v. 5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes
IMA Chen, K Chu, K Palaniappan, M Pillay, A Ratner, J Huang, ...
Nucleic acids research 47 (D1), D666-D677, 2019
3362019
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ...
Nature biotechnology 35 (7), 676-683, 2017
1612017
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ...
Nature biotechnology 36 (4), 359-367, 2018
1592018
The human microbiome: from symbiosis to pathogenesis
EA Eloe-Fadrosh, DA Rasko
Annual review of medicine 64, 145-163, 2013
1572013
Metagenomics uncovers gaps in amplicon-based detection of microbial diversity
EA Eloe-Fadrosh, NN Ivanova, T Woyke, NC Kyrpides
Nature Microbiology 1 (4), 1-4, 2016
1282016
Compositional differences in particle‐associated and free‐living microbial assemblages from an extreme deep‐ocean environment
EA Eloe, CN Shulse, DW Fadrosh, SJ Williamson, EE Allen, DH Bartlett
Environmental microbiology reports 3 (4), 449-458, 2011
1282011
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
1002019
Functional dynamics of the gut microbiome in elderly people during probiotic consumption
EA Eloe-Fadrosh, A Brady, J Crabtree, EF Drabek, B Ma, A Mahurkar, ...
MBio 6 (2), 2015
972015
Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
S Roux, JB Emerson, EA Eloe-Fadrosh, MB Sullivan
PeerJ 5, e3817, 2017
962017
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
EA Eloe-Fadrosh, D Paez-Espino, J Jarett, PF Dunfield, BP Hedlund, ...
Nature communications 7 (1), 1-10, 2016
912016
Aerosol Mycobacterium tuberculosis infection causes rapid loss of diversity in gut microbiota
K Winglee, E Eloe-Fadrosh, S Gupta, H Guo, C Fraser, W Bishai
PloS one 9 (5), e97048, 2014
792014
Going deeper: metagenome of a hadopelagic microbial community
EA Eloe, DW Fadrosh, M Novotny, LZ Allen, M Kim, MJ Lombardo, ...
PloS one 6 (5), e20388, 2011
782011
The deep-sea bacterium Photobacterium profundum SS9 utilizes separate flagellar systems for swimming and swarming under high-pressure conditions
EA Eloe, FM Lauro, RF Vogel, DH Bartlett
Applied and environmental microbiology 74 (20), 6298-6305, 2008
722008
IMG/VR v. 2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
D Paez-Espino, S Roux, IMA Chen, K Palaniappan, A Ratner, K Chu, ...
Nucleic acids research 47 (D1), D678-D686, 2019
662019
Impact of oral typhoid vaccination on the human gut microbiota and correlations with S. Typhi-specific immunological responses
EA Eloe-Fadrosh, MA McArthur, AM Seekatz, EF Drabek, DA Rasko, ...
PloS one 8 (4), e62026, 2013
632013
Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
S Roux, M Krupovic, RA Daly, AL Borges, S Nayfach, F Schulz, A Sharrar, ...
Nature microbiology 4 (11), 1895-1906, 2019
542019
Differential response of the cynomolgus macaque gut microbiota to Shigella infection
AM Seekatz, A Panda, DA Rasko, FR Toapanta, EA Eloe-Fadrosh, ...
PloS one 8 (6), e64212, 2013
502013
Isolation and characterization of a psychropiezophilic alphaproteobacterium
EA Eloe, F Malfatti, J Gutierrez, K Hardy, WE Schmidt, K Pogliano, ...
Applied and environmental microbiology 77 (22), 8145-8153, 2011
482011
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