StochKit2: software for discrete stochastic simulation of biochemical systems with events KR Sanft, S Wu, M Roh, J Fu, RK Lim, LR Petzold Bioinformatics 27 (17), 2457-2458, 2011 | 181 | 2011 |
The seasonality of diarrheal pathogens: A retrospective study of seven sites over three years DL Chao, A Roose, M Roh, KL Kotloff, JL Proctor PLoS neglected tropical diseases 13 (8), e0007211, 2019 | 83 | 2019 |
Accelerated maximum likelihood parameter estimation for stochastic biochemical systems BJ Daigle, MK Roh, LR Petzold, J Niemi BMC bioinformatics 13, 1-18, 2012 | 74 | 2012 |
Automated estimation of rare event probabilities in biochemical systems BJ Daigle, MK Roh, DT Gillespie, LR Petzold The Journal of chemical physics 134 (4), 2011 | 69 | 2011 |
Refining the weighted stochastic simulation algorithm DT Gillespie, M Roh, LR Petzold The Journal of chemical physics 130 (17), 2009 | 63 | 2009 |
State-dependent doubly weighted stochastic simulation algorithm for automatic characterization of stochastic biochemical rare events MK Roh, BJ Daigle, DT Gillespie, LR Petzold The Journal of chemical physics 135 (23), 2011 | 35 | 2011 |
State-dependent biasing method for importance sampling in the weighted stochastic simulation algorithm MK Roh, DT Gillespie, LR Petzold The Journal of chemical physics 133 (17), 2010 | 33 | 2010 |
Data-driven method for efficient characterization of rare event probabilities in biochemical systems MK Roh Bulletin of mathematical biology 81 (8), 3097-3120, 2019 | 8 | 2019 |
Compartmental Modeling Software: a fast, discrete stochastic framework for biochemical and epidemiological simulation CW Lorton, JL Proctor, MK Roh, PA Welkhoff Computational Methods in Systems Biology: 17th International Conference …, 2019 | 5 | 2019 |
Stochastic parameter search for events MK Roh, P Eckhoff BMC systems biology 8, 1-17, 2014 | 3 | 2014 |
SParSE++: improved event-based stochastic parameter search MK Roh, BJ Daigle BMC Systems Biology 10, 1-15, 2016 | 2 | 2016 |
Data-driven initialization of SParSE MK Roh, JL Proctor AIP Conference Proceedings 1863 (1), 2017 | | 2017 |
Accurate characterization of stochastic rare events in biochemical systems MK Roh University of California at Santa Barbara, 2011 | | 2011 |
StochKit2: Efficient and extensible software for stochastic simulation of biochemical systems KR Sanft, S Wu, H Li, J Fu, M Roh, LR Petzold | | |
Automatic optimization of importance sampling parameters in weighted stochastic simulation algorithm MK Roh, B Daigle Jr, DT Gillespie, LR Petzold | | |
Accelerated Maximum Likelihood Estimation for Stochastic Biochemical Systems BJ Daigle Jr, MK Roh, M Wheeler, LR Petzold, J Niemi | | |
Algorithms and Software for Discrete Stochastic Simulation of Biochemical Systems MK Roh, K Sanft, S Wu, J Fu, B Drawert, M Lawson, A Hellander, ... | | |